Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Prentice, P. M., Houslay, T. M., Wilson, A. J. 2022. Exploiting animal personality to reduce chronic stress in captive fish populations. Frontiers in Veterinary Science 9, 1046205.

Chronic stress is a major source of welfare problems in many captive populations, including fishes. While we have long known that chronic stress effects arise from maladaptive expression of acute stress response pathways, predicting where...

Saraiva, J. L., Rachinas-Lopes, P., Arechavala-Lopez, P. 2022. Finding the “golden stocking density”: A balance between fish welfare and farmers’ perspectives. Frontiers in Veterinary Science 9, 930221.

The effects of stocking density on fish welfare are complex and involve many interacting parameters. This complex relationship between fish welfare, stocking density and influencing factors make it challenging to define a specific optimal (“golden”)...

Torgerson-White, L., Sánchez-Suárez, W. 2022. Looking beyond the shoal: Fish welfare as an individual attribute. Animals 12(19), 2592.

Welfare is an individual attribute. In general, providing captive nonhuman animals with conditions conducive to good welfare is an idea more easily applied when dealing with few individuals. However, this becomes much harder—if not impossible—under...

Vanderzwalmen, M., Sánchez Lacalle, D., Tamilselvan, P. et al. 2022. The effect of substrate on water quality in ornamental fish tanks. Animals 12(19), 2679.

Almost all home aquaria contain substrate, either as intentional enrichment or for aesthetic purposes. For fishes, benefits of structural enrichment have been well considered, particularly in research and aquaculture settings. However, our understanding of the...

Gilmour, K. M., Bard, B. 2022. Social buffering of the stress response: Insights from fishes. Biology Letters 18(10), 20220332.

Social buffering of stress refers to the effect of a social partner in reducing the cortisol or corticosterone response to a stressor. It has been well studied in mammals, particularly those that form pair bonds...

Anderson, M. G., Campbell, A. M., Kuhn, D. D. et al. 2022. Impact of environmental complexity and stocking density on affective states of rainbow trout (Oncorhynchus mykiss). Animal Cognition 25(5), 1331–1343.

Environmental condition, such as environmental complexity or stocking density, can directly or indirectly influence animal emotion and ultimately, affective state. Affective states of animals can be assessed through judgement bias tests, evaluating responses to ambiguous...

Hepps Keeney, C., Harrison, T. M. 2022. Euthanasia complications in non-domestic species. Journal of Zoological and Botanical Gardens 3(4), 616–623.

There are very few studies describing euthanasia complications in non-domestic species. The goal of this study was to survey veterinarians to determine what complications may commonly occur during the euthanasia of non-domestic species. An online...

Ramos, J., Balasch, J. C., Tort, L. 2021. About welfare and stress in the early stages of fish. Frontiers in Veterinary Science 8, 634434.

In conclusion, the investigations carried out up to now demonstrate that during the early stages fish show high sensitivity to many types of stressors involving an array of responses to overcome alterations that could affect...

Berlinghieri, F., Panizzon, P., Penry-Williams, I. L. et al. 2021. Laterality and fish welfare - A review. Applied Animal Behaviour Science 236, 105239.

Humans interact with fishes in many contexts including aquaculture, scientific study and companion animals. In all of these contexts, fish welfare can be compromised through anthropogenic means. Concern for fish welfare has grown considerably in...

Coleman, K., Shapiro, S. J. (Eds.). 2021. Behavioral Biology of Laboratory Animals (1st ed). CRC Press, Boca Raton, FL.

This 30-chapter volume informs students and professionals about the behavioral biology of animals commonly housed in laboratory and other captive settings. Each species evolved under specific environmental conditions, resulting in unique behavioral patterns, many of...

Uiuiu, P., Lațiu, C., Păpuc, T. et al. 2021. Multi-approach assessment for stress evaluation in rainbow trout females, Oncorhynchus mykiss (Walbaum, 1792) from three different farms during the summer season. Animals 11(6), 1810.

Blood biochemistry parameters are valuable tools for monitoring fish health. Their baseline values are still undefined for a multitude of farmed fish species. In this study, changes in the blood profile of rainbow trout females...

Ellis, T., Katsiadaki, I. 2021. Clarification of early end-points for refinement of animal experiments, with specific reference to fish. Laboratory Animals 55(3), 244-253.

Appropriate end-points are integral to the refinement of laboratory animal experiments. Our recent experience has highlighted that ambiguity around end-points is hampering their adoption in experiments that cause severe suffering to fish. In toxicology, the...

Higgins, K., Guerrel, J., Lassiter, E. et al. 2021. Observations on spindly leg syndrome in a captive population of Andinobates geminisae. Zoo Biology 40(4), 330-341.

Amphibian health problems of unknown cause limit the success of the growing number of captive breeding programs. Spindly leg syndrome (SLS) is one such disease, where affected individuals with underdeveloped limbs often require euthanization. We...

Kay, W. R., Mawson, P. R. 2021. An efficient method for the euthanasia of cane toads (Rhinella marina) under northern Australian field conditions. Animals 11(8), 2239.

The euthanasia of cane toads under field conditions presents a number of logistical and animal welfare challenges. One recommended method of control involves the use of carbon dioxide in plastic bags. This paper describes the...

Zemanova, M. A. 2021. Noninvasive genetic assessment is an effective wildlife research tool when compared with other approaches. Genes 12(11), 1672.

Wildlife research has been indispensable for increasing our insight into ecosystem functioning as well as for designing effective conservation measures under the currently high rates of biodiversity loss. Genetic and genomic analyses might be able...

Hausmann, J. C., Krisp, A. R., Mans, C. et al. 2021. Analgesic efficacy of tramadol and morphine in White's tree frogs (Litoria caerulea). JAALAS 60(6), 681-686.

Published data are sparse regarding the recognition of clinically relevant pain and appropriate analgesia in amphibians. The amphibian analgesia literature has primarily focused on nociceptive pathways in a single species, the northern leopard frog (Rana...

Monreal-Pawlowsky, T., Vaicekauskaitė , R., Palencia Membrive, G. et al. 2021. Goal-oriented behavioural and environmental enrichment in aquarium species. Journal of Zoo and Aquarium Research, 9(4), 273-280.

Environmental enrichment is a common tool used in zoo and aquarium settings to provide mental and physical stimulation to animals under human care. This paper aims to present a primary approach to goal-oriented environmental and...

Ramos, J., Ortiz-Díez, G. 2021. Evaluation of environmental enrichment for Xenopus laevis using a preference test. Laboratory Animals 55(5), 428-434.

Xenopus laevis frogs have long been widely used as an animal model in research. However, their husbandry has scarcely evolved, although they are prone to environmental stress. Environmental enrichment has been shown to improve animal...

Woody, S. M., Santymire, R. M., Cronin, K. A. 2021. Posture as a non-invasive indicator of arousal in American toads (Anaxyrus americanus). Journal of Zoological and Botanical Gardens 2(1), 1–9.

Animal welfare has become a priority for modern zoos and aquariums. However, amphibians have not yet been the focus of much welfare research, perhaps in part because they do not tend to display many quantifiable...

Melfi, V. A., Dorey, N. R., Ward, S. (Eds.) 2020. Zoo Animal Learning and Training. John Wiley & Sons: Hoboken, NJ, 384 pp.

Comprehensively explains animal learning theories and current best practices in animal training within zoos. This accessible, up-to-date book on animal training in a zoo/aquaria context provides a unified approach to zoo animal learning, bringing together...

Byrnes, E. E., Lear, K. O., Morgan, D. L. et al. 2020. Respirometer in a box: Development and use of a portable field respirometer for estimating oxygen consumption of large‐bodied fishes. Journal of Fish Biology 96(4), 1045-1050.

Respirometry has become the standard method for measuring the metabolic rate of fishes. Traditionally, respirometry has required the fish to be kept in captivity and tested under controlled conditions; however, many species do not readily...

Harvey, A., Beausoleil, N., Ramp, D. et al. 2020. A ten-stage protocol for assessing the welfare of individual non-captive wild animals: Free-roaming horses (Equus ferus caballus) as an example. Animals 10(1), 148.

Knowledge of the welfare status of wild animals is vital for informing debates about the ways in which we interact with wild animals and their habitats. Currently, there is no published information about how to...

Zemanova, M. A. 2020. Towards more compassionate wildlife research through the 3Rs principles: Moving from invasive to noninvasive methods. Wildlife Biology 2020(1), no page numbers.

Research in ecology and wildlife biology remains crucial for increasing our knowledge and improving species management and conservation in the midst of the current biodiversity crisis. However, obtaining information on population status often involves invasive...

Petrović, T. G., Vučić, T. Z., Nikolić, S. Z. et al. 2020. The effect of shelter on oxidative stress and aggressive behavior in crested newt larvae (Triturus spp.). Animals 10(4), 603.

Shelters are important for animal survival. Provision of adequate hiding places allow animals to express their natural sheltering behavior and it can have different positive effects on cortisol levels, physiological processes and mental performance. Although...

Lawrence, M. J., Raby, G. D., Teffer, A. K. et al. 2020. Best practices for non-lethal blood sampling of fish via the caudal vasculature. Journal of Fish Biology 97(1), 4–15.

Blood sampling through the caudal vasculature is a widely used technique in fish biology for investigating organismal health and physiology. In live fishes, it can provide a quick, easy and relatively non‐invasive method for obtaining...