Refinement Database

Database on Refinement of Housing, Husbandry, Care, and Use of Animals in Research

This database, created in 2000, is updated every four months with newly published scientific articles, books, and other publications related to improving or safeguarding the welfare of animals used in research.

Tips for using the database:

  • This landing page displays all of the publications in the database.
  • Use the drop-down menus to filter these publications by Animal Type, Setting, and/or Topic.
  • Clicking on a parent category (e.g., Rodent) will include publications relating to all the items in that category (e.g., Chinchilla, Gerbil, Guinea Pig, etc.).
  • You may also add a keyword to further narrow your search.
  • Please note that at this time, only publications dated 2010 or later (with some exceptions) can be filtered by Animal Type and Topic, and only publications dated 2020 or later (with some exceptions) can be filtered by Setting. Most publications older than 2010 can only be searched by keyword. 
Lambert, K. 2021. DIY: Acacia gum hanging saucer. Laboratory Animal Science Professional 9(5) (September/October), 50.

This article describes the ingredients, supplies, and directions to make this DIY hanging item, which is great for NHP and swine.

Lambert, K. 2021. DIY: Busy boxes. Laboratory Animal Science Professional 9(6) (November/December), 32.

This article describes the ingredients and directions to make this simple DIY destructible enrichment for NHP and swine.

Vining, A. Q., Nunn, C. L., Samson, D. R. 2021. Enriched sleep environments lengthen lemur sleep duration. PLOS ONE 16(11), e0253251.

Characteristics of the sleep-site are thought to influence the quality and duration of primate sleep, yet only a handful of studies have investigated these links experimentally. Using actigraphy and infrared videography, we quantified sleep in...

Laméris, D. W., Verspeek, J., Depoortere, A. et al. 2021. Effects of enclosure and environmental enrichment on the behaviour of ring-tailed lemurs (Lemur catta). Journal of Zoological and Botanical Gardens 2(2), 164–173.

Environmental enrichment is widely used to improve the quality of life of animals under human care. To successfully implement enrichment programs, it is important to evaluate their effect in different enclosure types since housing conditions...

Byrnes, E. E., Lear, K. O., Morgan, D. L. et al. 2020. Respirometer in a box: Development and use of a portable field respirometer for estimating oxygen consumption of large‐bodied fishes. Journal of Fish Biology 96(4), 1045-1050.

Respirometry has become the standard method for measuring the metabolic rate of fishes. Traditionally, respirometry has required the fish to be kept in captivity and tested under controlled conditions; however, many species do not readily...

Ross, S. R., Leinwand, J. G. 2020. A review of research in primate sanctuaries. Biology Letters 16(4), 1620200033.

While non-human primate studies have long been conducted in laboratories, and more recently at zoological parks, sanctuaries are increasingly considered a viable setting for research. Accredited sanctuaries in non-range countries house thousands of primates formerly...

Lawrence, M. J., Raby, G. D., Teffer, A. K. et al. 2020. Best practices for non-lethal blood sampling of fish via the caudal vasculature. Journal of Fish Biology 97(1), 4–15.

Blood sampling through the caudal vasculature is a widely used technique in fish biology for investigating organismal health and physiology. In live fishes, it can provide a quick, easy and relatively non‐invasive method for obtaining...

Chapa, J. M., Maschat, K., Iwersen, M. et al. 2020. Accelerometer systems as tools for health and welfare assessment in cattle and pigs – A review. Behavioural Processes 181, 104262.

Welfare assessment has traditionally been performed by direct observation by humans, providing information at only selected points in time. Recently, this assessment method has been questioned, as ‘Precision Livestock Farming’ technologies may be able to...

Greene, L. K., Clarke, T. A., Southworth, C. A. et al. 2020. Daily lettuce supplements promote foraging behavior and modify the gut microbiota in captive frugivores. Zoo Biology 39(5), 334-344.

For captive primates, greater provisioning of leafy greens or foliage can promote natural foraging behavior while boosting fiber intake. Recalcitrant fiber, although minimally available to endogenous metabolism, is readily fermented into nutrients by gut microbes...

Hansell, M., Åsberg, A., Laska, M. 2020. Food preferences and nutrient composition in zoo-housed ring-tailed lemurs, Lemur catta. Physiology & Behavior 226, 113125.

The aim of the present study was to assess the occurrence of spontaneous food preferences in zoo-housed ring-tailed lemurs and to analyze whether these preferences correlate with nutrient composition. Using a two-alternative choice test three...

Mellor, E. L., Cuthill, I. C., Schwitzer, C. et al. 2020. Large lemurs: Ecological, demographic and environmental risk factors for weight gain in captivity. Animals 10(8), 1443.

Excessive body mass, i.e., being overweight or obese, is a health concern associated with issues such as reduced fertility and lifespan. Some lemur species are prone to extreme weight gain in captivity, yet others are...

Pedrazzani, A. S., Quintiliano, M. H., Bolfe, F. et al. 2020. Tilapia on-farm welfare assessment protocol for semi-intensive production systems. Frontiers in Veterinary Science 7, 606388.

The aim of this study was to develop and test a tilapia on-farm welfare assessment protocol, based on Brazilian semi-intensive production systems. The study included two mains steps: the elaboration of tilapia welfare protocol and...

Butler, J. L., Kennerley, S. W. 2019. Mymou: A low-cost, wireless touchscreen system for automated training of nonhuman primates. Behaviour Research Methods 51, 2559–2572.

Training nonhuman primates (NHPs) to perform cognitive tasks is essential for many neuroscientific investigations, yet laboratory training is a time-consuming process with inherent limitations. Habituating NHPs to the laboratory staff and experimental equipment can take...

Ellis, T., Rimmer, G. S. E., Parker, S.-J. et al. 2019. In-tank underwater cameras can refine monitoring of laboratory fish. Animal Welfare 28(2), 191-203.

Laboratory animals need to be monitored to check the status of their health and welfare. Routine checks of laboratory fish are limited to visual observations of physical appearance and behaviour, but for species held in...

Bolognesi, M. C., dos Santos Gauy, A. C., Gonçalves-de-Freitas, E. 2019. Tactile stimulation reduces aggressiveness but does not lower stress in a territorial fish. Scientific Reports 9, 40.

Body tactile stimulation has a positive effect upon highly social animals, such as mammals and cleaner-client coral-reef fish, by relieving stress and improving health. Conversely, some tactile contacts are naturally detrimental, such as those resulted...

Howell, C. P., Cheyne, S. M. 2019. Complexities of using wild versus captive activity budget comparisons for assessing captive primate welfare. Journal of Applied Animal Welfare Science 22(1), 78-96.

Activity budget comparisons between groups or individuals in the wild and those in captivity are commonly used to determine the range of wild-type behaviors that nonhuman animals in captivity perform. These comparisons are conducted with...

Arechavala-Lopez, P., Saraiva, J. L. 2019. Welfare of Cultured and Experimental Fishes. Basel, Switzerland: MDPI, 132 pages.

This open access book is a printed edition of the Special Issue on Welfare of Cultured and Experimental Fishes that was published in the journal Fishes. The PDF is free for download.

Fife-Cook, I., Franks, B. 2019. Positive welfare for fishes: Rationale and areas for future study. Fishes 4(2), 31.

Traditional animal welfare paradigms have focused on maintaining physical health and mitigating negative impacts to wellbeing. Recently, however, the field has increasingly recognized the importance of positive welfare (i.e., mental and physical states that exceed...

Saraiva, J. L., Arechavala-Lopez, P., Castanheira, M. F. et al. 2019. A global assessment of welfare in farmed fishes: The FishEthoBase. Fishes 4(2), 30.

Fish welfare is an essential issue that needs to be tackled by the aquaculture industry. In order to address it, studies have been limited to a small number of species and the information is generally...

Gonçalves-de-Freitas, E., Bolognesi, M. C., dos Santos Gauy, A. C. et al. 2019. Social behavior and welfare in Nile tilapia. Fishes 4(2), 23.

Fish social behavior can be affected by artificial environments, particularly by factors that act upon species that show aggressive behavior to set social rank hierarchy. Although aggressive interactions are part of the natural behavior in...

Association of Primate Veterinarians. 2019. Association of Primate Veterinarians’ guidelines for nonhuman primate restraint. JAALAS 58(3), 282-284.

The Association of Primate Veterinarians (APV) recognizes that several forms of restraint, including physical and chemical, are necessary for the safe handling of nonhuman primates (NHPs). The following guidelines aim to provide information to researchers...

McIntosh, M. K., Armitage-Brown, B., Levy, R. 2019. Refinements of equipment and methodology to reduce risk during pole-guided chair transfer of nonhuman primates. JAALAS 58(4), 462-468.

Neurophysiologic studies of NHP commonly involve their transfer from a housing enclosure to a laboratory by using a mobile chair. This transfer should be performed in a manner that is safe and minimizes stress for...

Association of Primate Veterinarians. 2019. Association of Primate Veterinarians’ Position Statement: Cerebrospinal fluid aspiration for nonhuman primates in biomedical research. JAALAS 58(4), 428-429.

The Association of Primate Veterinarians (APV) recognizes that CSF collection may be required for both clinical and research purposes in nonhuman primates (NHP). Because there are inherent risks associated with the technique, the laboratory animal...

Chatigny, F. 2019. The controversy on fish pain: A veterinarian’s perspective. Journal of Applied Animal Welfare Science 22(4), 400-410.

Fish welfare is still a relatively new field. As such, regulations and protocols to ensure fish welfare are currently limited and vary considerably in different jurisdictions. This is in part because of the ongoing controversy...

McKenzie, D. J., Sadoul, B., Geffroy, B. 2019. Measuring cortisol, the major stress hormone in fishes. Journal of Fish Biology 94(4), 540-555.

Stress in teleosts is an increasingly studied topic because of its interaction with growth, reproduction, immune system and ultimately fitness of the animal. Whether it is for evaluating welfare in aquaculture, adaptive capacities in fish...